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Generation Details
Methods
Alignment: MAFFT
Trimming: None
Tree Builder: FASTTREE
Parameters
Substitution Model: GTR+G
Node Support: SH-like local support (1000 resamples), 0–1 scale
Configuration
Command: fasttree -gtr -nt -gamma -boot 1000 alignment.fasta > tree.newick
FastTree 2.2.0 infers approximately-maximum-likelihood phylogenetic trees.
Arguments: -gtr (Generalized Time Reversible model, CAT approximation),
-nt (Nucleotide
alignment),
-gamma (Rescale branch lengths to optimize Gamma20 likelihood),
-boot 1000 (1000 SH-like local supports).